Chapter 5 Exercises
Welcome to the exercises! We are going to do three exercises based on a dataset that is already available in your R environment. We are not providing answers to the exercises. You will have to find them yourself.
The dataset is called iris. It’s coming default with R. According to R help page this is:
This famous (Fisher's or Anderson's) iris data set gives the measurements in centimeters of the variables sepal length and width and petal length and width, respectively, for 50 flowers from each of 3 species of iris. The species are setosa, versicolor, and virginic
You can simply write iris in your R console to make sure you have the dataset. If you see an error, try
The dataset contains 5 columns corresponding to four variables and one grouping information.
PCA only works on the numerical data. You can extract the four numerical variables using
The grouping information can be extracted using
Now you have all you need!
5.2 Exercise 1
How does the data look? Do you see any pattern!? Any differences between groups?
Produce a plot showing the differences between the groups. You will have to do a PCA and make a plot of PCA scores (components)
5.3 Exercise 2
What is the most important variable in component 4? What does it show? What is the meaning of it?
5.4 Exercise 3
What is the most important variable affected by the species of lowers?
5.5 Exercise 4
Remove the first component and reconstruct the data. Now repeat exercises 1 to 3!