Preface

Data Integration using MOFA lab comes in two flavors, light and detailed version. See a short description on what to except from each and feel free to choose the one you want to work with during the workshop.

Light version

• Shows how we use MOFA2 package for factor analysis model, integrating multi-omics data in unsupervised way.
• Gives minimalist explanation of the method, skipping mathematical foundations. It may be good as first read or as a quick guide how to use MOFA2 when already knowing the foundations behind the methods.

Take me to the light version

Detailed version

• Introduces MOFA starting from mathematical foundations of PCA. Goes over PCA, PPCA, BPCA, CCA, BCCA to reach GA MOFA.
• It includes mathematical foundations and R code from scratch. Yay!
• It shows how to run things with MOFA2, also introducing time series analysis (R code and via MEFISTO).
• May take some time to go through and be slightly challenging. Recommended when wanting to understand the methods.

Take me to the detailed version